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author | Leon Anavi <leon.anavi@konsulko.com> | 2021-03-30 14:10:06 +0300 |
---|---|---|
committer | Armin Kuster <akuster808@gmail.com> | 2021-04-03 07:46:03 -0700 |
commit | 53ef17a12a8af476d150bd3d273b8d839b8d3656 (patch) | |
tree | 2f5d0386e37e90f41d62de59c024e1b8a80892d1 | |
parent | e27614eab46d9bd7feea4809d1408e43e2b0e816 (diff) | |
download | meta-openembedded-contrib-53ef17a12a8af476d150bd3d273b8d839b8d3656.tar.gz |
python3-h5py: Upgrade 3.1.0 -> 3.2.1
Upgrade to release 3.2.1:
- Added support to use the HDF5 ROS3 driver to access HDF5 files
on S3
- Setting the config option default_file_mode to values other than
'r' is deprecated. Pass the desired mode when opening a
:class:`~.File` instead.
- :exc:`OSError` exceptions raised by h5py should now have a useful
.errno attribute, where HDF5 provides this information.
Subclasses such as :exc:`FileNotFoundError` should also be raised
where appropriate.
- Fix reading data with a datatype of variable-length arrays of
fixed length strings.
- Fix :meth:`.Dataset.read_direct` and :meth:`.Dataset.write_direct`
when the source and destination have different shapes.
- Fix selecting data using integer indices in
:meth:`.Dataset.read_direct` and :meth:`.Dataset.write_direct`.
- Fix exception handling in :meth:`.Group.visititems`.
- Issue a warning when File(..., swmr=True) is specified with any
mode other than 'r', as the SWMR option is ignored in these cases.
- Fix NumPy 1.20 deprecation warnings concerning the use of None as
shape, and the deprecated aliases np.float, np.int and np.bool.
- Fix :attr:`.File.driver` when the read-only S3 driver is
available.
Add hdf5-native as a dependency to avoid:
error: libhdf5.so: cannot open shared object file: No such file or directory
Signed-off-by: Leon Anavi <leon.anavi@konsulko.com>
Signed-off-by: Khem Raj <raj.khem@gmail.com>
Signed-off-by: Trevor Gamblin <trevor.gamblin@windriver.com>
(cherry picked from commit f95812d0bc1bf25778566a44791257e5a113ab63)
Signed-off-by: Armin Kuster <akuster808@gmail.com>
-rw-r--r-- | meta-python/recipes-devtools/python/python3-h5py/0001-setup.py-Fix-numpy-version.patch | 8 | ||||
-rw-r--r-- | meta-python/recipes-devtools/python/python3-h5py/0001-setup_build.py-avoid-absolute-path.patch | 4 | ||||
-rw-r--r-- | meta-python/recipes-devtools/python/python3-h5py_3.2.1.bb (renamed from meta-python/recipes-devtools/python/python3-h5py_3.1.0.bb) | 3 |
3 files changed, 8 insertions, 7 deletions
diff --git a/meta-python/recipes-devtools/python/python3-h5py/0001-setup.py-Fix-numpy-version.patch b/meta-python/recipes-devtools/python/python3-h5py/0001-setup.py-Fix-numpy-version.patch index 4881b023c8..9b79cc5395 100644 --- a/meta-python/recipes-devtools/python/python3-h5py/0001-setup.py-Fix-numpy-version.patch +++ b/meta-python/recipes-devtools/python/python3-h5py/0001-setup.py-Fix-numpy-version.patch @@ -1,4 +1,4 @@ -From e6c0d487fb5e6063305b8b3187896fbfe5720ed2 Mon Sep 17 00:00:00 2001 +From b1d4d171fd13624f3d8bb917f716b62494066501 Mon Sep 17 00:00:00 2001 From: Leon Anavi <leon.anavi@konsulko.com> Date: Mon, 22 Feb 2021 18:42:43 +0200 Subject: [PATCH] setup.py: Fix numpy version @@ -14,12 +14,12 @@ Signed-off-by: Leon Anavi <leon.anavi@konsulko.com> 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py -index 7dbe583..6602c97 100755 +index 4b2890c..42ba21b 100755 --- a/setup.py +++ b/setup.py @@ -49,7 +49,7 @@ SETUP_REQUIRES = [ - f"Cython >=0.29; python_version<'3.8'", - f"Cython >=0.29.14; python_version>='3.8'", + "Cython >=0.29.14; python_version=='3.8'", + "Cython >=0.29.15; python_version>='3.9'", ] + [ - f"numpy =={np_min}; python_version{py_condition}" + f"numpy >={np_min}; python_version{py_condition}" diff --git a/meta-python/recipes-devtools/python/python3-h5py/0001-setup_build.py-avoid-absolute-path.patch b/meta-python/recipes-devtools/python/python3-h5py/0001-setup_build.py-avoid-absolute-path.patch index d0c2ece19b..0b8555734a 100644 --- a/meta-python/recipes-devtools/python/python3-h5py/0001-setup_build.py-avoid-absolute-path.patch +++ b/meta-python/recipes-devtools/python/python3-h5py/0001-setup_build.py-avoid-absolute-path.patch @@ -1,4 +1,4 @@ -From 1a46082d0889a784037952c4da0cde3822849032 Mon Sep 17 00:00:00 2001 +From 6f8cee826ef9309c174aa97cb6af2ba532ed9dba Mon Sep 17 00:00:00 2001 From: Mingli Yu <mingli.yu@windriver.com> Date: Thu, 28 Jan 2021 18:44:10 -0800 Subject: [PATCH] setup_build.py: avoid absolute path @@ -15,7 +15,7 @@ Signed-off-by: Leon Anavi <leon.anavi@konsulko.com> 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup_build.py b/setup_build.py -index 3c7c7ad..d824bdd 100644 +index 78c6677..64db7f7 100644 --- a/setup_build.py +++ b/setup_build.py @@ -21,7 +21,7 @@ from setup_configure import BuildConfig diff --git a/meta-python/recipes-devtools/python/python3-h5py_3.1.0.bb b/meta-python/recipes-devtools/python/python3-h5py_3.2.1.bb index 03ae4c9db4..5faa0b8080 100644 --- a/meta-python/recipes-devtools/python/python3-h5py_3.1.0.bb +++ b/meta-python/recipes-devtools/python/python3-h5py_3.2.1.bb @@ -4,7 +4,7 @@ SECTION = "devel/python" LICENSE = "BSD-3-Clause" LIC_FILES_CHKSUM = "file://LICENSE;md5=113251d71fb0384712c719b567261c5c" -SRC_URI[sha256sum] = "1e2516f190652beedcb8c7acfa1c6fa92d99b42331cbef5e5c7ec2d65b0fc3c2" +SRC_URI[sha256sum] = "89474be911bfcdb34cbf0d98b8ec48b578c27a89fdb1ae4ee7513f1ef8d9249e" SRC_URI_append = " \ file://0001-setup_build.py-avoid-absolute-path.patch \ @@ -19,6 +19,7 @@ DEPENDS = "python3-pkgconfig-native \ python3-cython-native \ python3-numpy-native \ python3-six-native \ + hdf5-native \ python3 \ hdf5 \ " |